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Since we use git ls-files to produce the list of all tests for -A, if the source directory is owned by somebody other than root one might get: fatal: unsafe repository ('/home/balrog/repos/iwd' is owned by someone else) To add an exception for this directory, call: git config --global --add safe.directory /home/balrog/repos/iwd Starting /home/balrog/repos/iwd/tools/..//autotests/ threw an uncaught exception Traceback (most recent call last): File "/home/balrog/repos/iwd/tools/run-tests", line 966, in run_auto_tests subtests = pre_test(ctx, test, copied) File "/home/balrog/repos/iwd/tools/run-tests", line 814, in pre_test raise Exception("No hw.conf found for %s" % test) Exception: No hw.conf found for /home/balrog/repos/iwd/tools/..//autotests/ Mark args.testhome as a safe directory on every run.