diff --git a/PBot/Commands.pm b/PBot/Commands.pm
index 087c8f37..66429787 100644
--- a/PBot/Commands.pm
+++ b/PBot/Commands.pm
@@ -38,8 +38,8 @@ sub initialize {
   $self->{metadata} = PBot::HashObject->new(pbot => $self->{pbot}, name => 'Commands', filename => $conf{filename});
   $self->load_metadata;
 
-  $self->register(sub { $self->set(@_);   },  "cmdset",   90);
-  $self->register(sub { $self->unset(@_); },  "cmdunset", 90);
+  $self->register(sub { $self->set(@_)   },  "cmdset",   90);
+  $self->register(sub { $self->unset(@_) },  "cmdunset", 90);
 }
 
 sub register {
diff --git a/PBot/FactoidCommands.pm b/PBot/FactoidCommands.pm
index 812c9b80..837f9dbb 100644
--- a/PBot/FactoidCommands.pm
+++ b/PBot/FactoidCommands.pm
@@ -20,7 +20,7 @@ use Time::HiRes qw(gettimeofday);
 use Getopt::Long qw(GetOptionsFromString);
 use POSIX qw(strftime);
 use Storable;
-use LWP::UserAgent ();
+use LWP::UserAgent;
 use JSON;
 
 use PBot::Utils::SafeFilename;
diff --git a/PBot/NickList.pm b/PBot/NickList.pm
index 920af598..b786f67f 100644
--- a/PBot/NickList.pm
+++ b/PBot/NickList.pm
@@ -211,12 +211,6 @@ sub is_present_similar {
   $channel = lc $channel;
   $nick = lc $nick;
 
-=cut
-  use Devel::StackTrace;
-  my $trace = Devel::StackTrace->new(indent => 1, ignore_class => ['PBot::PBot', 'PBot::IRC']);
-  $self->{pbot}->{logger}->log("is_present_similar stacktrace: " . $trace->as_string() . "\n");
-=cut
-
   return 0 if not exists $self->{nicklist}->{$channel};
   return $self->{nicklist}->{$channel}->{$nick}->{nick} if $self->is_present($channel, $nick);
   return 0 if $nick =~ m/(?:^\$|\s)/;  # not nick-like
@@ -232,11 +226,6 @@ sub is_present_similar {
     my $distance = fastdistance($nick, $person);
     my $length = length $nick > length $person ? length $nick : length $person;
 
-=cut
-    my $p = $length != 0 ? $distance / $length : 0;
-    $self->{pbot}->{logger}->log("[$percentage] $nick <-> $person: $p %\n");
-=cut
-
     if ($length != 0 && $distance / $length <= $percentage) {
       return $self->{nicklist}->{$channel}->{$person}->{nick};
     }
diff --git a/PBot/PBot.pm b/PBot/PBot.pm
index ef4b7a40..da58e6d6 100644
--- a/PBot/PBot.pm
+++ b/PBot/PBot.pm
@@ -83,12 +83,6 @@ sub initialize {
   # logger created first to allow other modules to log things
   $self->{logger}   = PBot::Logger->new(pbot => $self, filename => "$data_dir/log/log", %conf);
 
-  $self->{version}  = PBot::VERSION->new(pbot => $self, %conf);
-  $self->{logger}->log($self->{version}->version . "\n");
-  $self->{logger}->log("Args: @ARGV\n") if @ARGV;
-
-  return if $conf{logger_only};
-
   # make sure the environment is sane
   if (not -d $data_dir) {
     $self->{logger}->log("Data directory ($data_dir) does not exist; aborting...\n");
@@ -105,12 +99,20 @@ sub initialize {
     exit;
   }
 
+  # then commands so the modules can register new commands
+  $self->{commands} = PBot::Commands->new(pbot => $self, filename => "$data_dir/commands", %conf);
+
+  # the version
+  $self->{version}  = PBot::VERSION->new(pbot => $self, %conf);
+  $self->{logger}->log($self->{version}->version . "\n");
+  $self->{logger}->log("Args: @ARGV\n") if @ARGV;
+
+  # log the configured paths
   $self->{logger}->log("data_dir: $data_dir\n");
   $self->{logger}->log("module_dir: $module_dir\n");
   $self->{logger}->log("plugin_dir: $plugin_dir\n");
 
   $self->{timer}    = PBot::Timer->new(timeout => 10, %conf);
-  $self->{commands} = PBot::Commands->new(pbot => $self, filename => "$data_dir/commands", %conf);
   $self->{func_cmd} = PBot::FuncCommand->new(pbot => $self, %conf);
   $self->{refresher} = PBot::Refresher->new(pbot => $self);
 
diff --git a/PBot/VERSION.pm b/PBot/VERSION.pm
index 16577cef..66190dae 100644
--- a/PBot/VERSION.pm
+++ b/PBot/VERSION.pm
@@ -61,7 +61,7 @@ sub version_cmd {
         return "/say " . $self->version . "; you have the latest version.";
       }
     } else {
-      my $nick = $self->{pbot}->{nicklist}->is_present_similar($arguments);
+      my $nick = $self->{pbot}->{nicklist}->is_present_similar($from, $arguments);
       if ($nick) {
         return "/say $nick: " . $self->version;
       }